BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BA0AB022E10SP1|AL427918
(561 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig541 1103 0.0
>3x_Contig541
Length = 1792
Score = 1103 bits (556), Expect = 0.0
Identities = 559/560 (99%)
Strand = Plus / Plus
Query: 1 gatcaatatctcatgtcttaatggcacacgacccgatagtgccatgtaaacaccataaag 60
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gatcaaaatctcatgtcttaatggcacacgacccgatagtgccatgtaaacaccataaag 60
Query: 61 agggatagccaccaccaagattaagttcaaccagttcaaatgcagatgccagttattcag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 agggatagccaccaccaagattaagttcaaccagttcaaatgcagatgccagttattcag 120
Query: 121 agtccatggcaactcactaatatgtcttttgttcttatacttttccttttccttcttatc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 agtccatggcaactcactaatatgtcttttgttcttatacttttccttttccttcttatc 180
Query: 181 ttgttccaataggtaatccatattagagtcattctcaaaatcaacgtccgccatctgttt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ttgttccaataggtaatccatattagagtcattctcaaaatcaacgtccgccatctgttt 240
Query: 241 agaccccatcaatgacccaagcccgttaacaacacggacggacttcttattggcccctgc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 agaccccatcaatgacccaagcccgttaacaacacggacggacttcttattggcccctgc 300
Query: 301 ggccaacacattagcgttcactaaatccacttgctccatgatgaaaagagaggctagtag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ggccaacacattagcgttcactaaatccacttgctccatgatgaaaagagaggctagtag 360
Query: 361 tattcagacacttgttctttgtttcttccttacttctggcacttatttccgtataccaga 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 tattcagacacttgttctttgtttcttccttacttctggcacttatttccgtataccaga 420
Query: 421 gacacactagacacacaatacctgaaatacgatgggttgagattggtggtttggctaagt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 gacacactagacacacaatacctgaaatacgatgggttgagattggtggtttggctaagt 480
Query: 481 caaacaaattaaaacaagaattaataaggatgaggatgagtatcaaatgtctgtgattcc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 caaacaaattaaaacaagaattaataaggatgaggatgagtatcaaatgtctgtgattcc 540
Query: 541 attcctacatatatatatat 560
||||||||||||||||||||
Sbjct: 541 attcctacatatatatatat 560
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.38 0.711 1.31
Gapped
Lambda K H
1.38 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6908
Number of Sequences: 1807
Number of extensions: 6908
Number of successful extensions: 219
Number of sequences better than 1.0e-20: 1
length of query: 561
length of database: 10,358,551
effective HSP length: 16
effective length of query: 545
effective length of database: 10,329,639
effective search space: 5629653255
effective search space used: 5629653255
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.8 bits)
S1: 12 (24.3 bits)
S2: 50 (99.7 bits)